PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G155300.1
Common NameB456_008G155300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 509aa    MW: 56277.2 Da    PI: 9.1012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G155300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05113133323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F r  nL+ H r H
  Gorai.008G155300.1 113 CEICGKGFQRDQNLQLHRRGH 133
                         *******************88 PP

2zf-C2H2120.00066187209123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Gorai.008G155300.1 187 WKCDKCSKQYAVQSDWKAHSKTC 209
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.27E-6110133No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5110133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.489111133IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4175208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.27E-6182207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MTITAWQYKN YANKTEIIFG FPMLAEPNLI LELTEKMTEE SISDVFVINP IPGSNPPVAK  60
KKRNLPGTPV IFVNLMTKCC LRFPHMIWVI ADPEAEVIAL SPKTLMATNR FLCEICGKGF  120
QRDQNLQLHR RGHNLPWKLK QRSTKEVRKR VYVCPEKTCV HHHPSRALGD LTGIKKHFCR  180
KHGEKKWKCD KCSKQYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALAE  240
ETARVNAASS MHSNINHLMG NQIGPPMAQH FPPIFKPISS NNVTIDQTSC GLSLWMGQAS  300
QFHDSIPKSL QEIHQFGSVI SGSIYSDPLV SISNPPASGY HLNWVLGNKV SPSHAEELTS  360
TSLPLNNVKE NGARLVSVPS LFSTQKLHSH QTTSANMSAT ALLQKAAQIG ATSTDTSFLG  420
SLGTKCSISQ IQEGNKYSGL YVSNTPPTSF GSDLENSAND ISNLNQLQMQ PAKRQRLQNE  480
DSSGGQTRDF LGVGVLPICH PSSINGWT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8896657e-79KT889665.1 Corchorus olitorius cultivar Sudan Green microsatellite JROm311 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438195.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-147IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0D2PVM30.0A0A0D2PVM3_G
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-148C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]